1. GenomeView
GenomeView is a next-generation stand-alone genome browser and editor initiated in the BSB group at VIB and currently developed at Broad Institute. It provides interactive visualization of sequences, annotation, multiple alignments, syntenic mappings, short read alignments and more. Man...
标签:Genomics, Comparative genomics, Comparative transcriptomics,Transcriptomics, Gene annotation retrieval, Quality Control, Sequencing, Sequence analysis
2. QUAST
QUAST stands for QUality ASsessment Tool. It evaluates a quality of genome assemblies by computing various metrics and providing nice reports.
标签:Quality Control, Genomic Assembly Evaluation, Sequence analysis
3. Geneious
Search, organize and analyze genomic and protein information of any size via desktop program that provides publication ready images to enhance the impact of your research.
标签:Phylogenetics, Sequence analysis, De-novo assembly,Genomics, Population genetics,Metagenomics, Structural variation, RNA-Seq,Epigenomics
4. NCBI Genome Workbench
"NCBI Genome Workbench is an integrated application for viewing and analyzing sequence data. With Genome Workbench, you can view data in publically available sequence databases at NCBI, and mix this data with your own private data."
标签:Whole Genome Resequencing Analysis, Next Generation Sequencing, Sequence annotation, Sequence analysis
5. Pipeline Pilot
Analysis and workflow development of Next Generation Sequencing and gene expression.
标签:Next Generation Sequencing,Gene expression, Sequence analysis, SNP discovery
6. Stacks
Software pipeline for building loci out of a set of short-read sequenced samples. Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-se...
标签:Nucleic acid sequence analysis